Variant report

Variant	rs12952495
Chromosome Location	chr17:17687776-17687777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr17:17685078-17690155	SK-N-SH	brain:	n/a	chr17:17688092-17688107
2	CTBP2	chr17:17686048-17688034	H1-hESC	embryonic stem cell:	n/a	n/a
3	EGR1	chr17:17686392-17687796	ECC-1	luminal epithelium:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
4	POLR2A	chr17:17687100-17687983	PFSK-1	brain:	n/a	n/a
5	EP300	chr17:17686561-17687795	ECC-1	luminal epithelium:	n/a	chr17:17687090-17687106
6	POLR2A	chr17:17687036-17687848	SK-N-MC	brain:	n/a	n/a
7	TCF12	chr17:17686380-17687959	ECC-1	luminal epithelium:	n/a	n/a
8	PBX3	chr17:17687647-17687813	GM12878	blood:	n/a	n/a
9	MTA3	chr17:17686508-17687869	GM12878	blood:	n/a	n/a
10	TEAD4	chr17:17686418-17687939	ECC-1	luminal epithelium:	n/a	chr17:17687665-17687674
11	PML	chr17:17687199-17687792	GM12878	blood:	n/a	n/a
12	ZBTB7A	chr17:17686412-17688378	ECC-1	luminal epithelium:	n/a	chr17:17686466-17686475
13	TAF1	chr17:17687319-17687988	H1-neurons	neurons:	n/a	n/a
14	TCF12	chr17:17686344-17687906	ECC-1	luminal epithelium:	n/a	n/a
15	ESR1	chr17:17686139-17687856	ECC-1	luminal epithelium:	n/a	chr17:17686621-17686638 chr17:17686621-17686636
16	TEAD4	chr17:17687440-17687879	H1-hESC	embryonic stem cell:	n/a	chr17:17687665-17687674
17	NFIC	chr17:17686440-17687941	ECC-1	luminal epithelium:	n/a	n/a
18	ZBTB7A	chr17:17684109-17688114	ECC-1	luminal epithelium:	n/a	chr17:17686466-17686475 chr17:17686238-17686245
19	REST	chr17:17684966-17688399	H1-neurons	neurons:	n/a	chr17:17687032-17687045 chr17:17688128-17688138 chr17:17687943-17687957 chr17:17686391-17686401 chr17:17687035-17687048 chr17:17686521-17686534 chr17:17685128-17685141 chr17:17686200-17686213
20	TEAD4	chr17:17687464-17687900	H1-hESC	embryonic stem cell:	n/a	chr17:17687665-17687674
21	STAT5A	chr17:17687097-17688039	GM12878	blood:	n/a	chr17:17687497-17687509 chr17:17687498-17687510 chr17:17687542-17687554
22	ELF1	chr17:17687299-17688094	GM12878	blood:	n/a	n/a
23	ESR1	chr17:17686286-17687812	ECC-1	luminal epithelium:	n/a	chr17:17686621-17686638 chr17:17686621-17686636
24	NFIC	chr17:17686403-17687880	ECC-1	luminal epithelium:	n/a	n/a
25	REST	chr17:17686903-17687969	H1-neurons	neurons:	n/a	chr17:17687032-17687045 chr17:17687943-17687957 chr17:17687035-17687048
26	MAX	chr17:17686009-17688725	ECC-1	luminal epithelium:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17686269-17686279 chr17:17687501-17687511
27	MAX	chr17:17686420-17688111	ECC-1	luminal epithelium:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17687501-17687511
28	RUNX3	chr17:17686575-17687852	GM12878	blood:	n/a	chr17:17687370-17687385
29	EP300	chr17:17686373-17688022	ECC-1	luminal epithelium:	n/a	chr17:17687090-17687106
30	POLR2A	chr17:17684329-17688195	H1-neurons	neurons:	n/a	n/a
31	POLR2A	chr17:17686390-17688189	H1-neurons	neurons:	n/a	n/a
32	SIN3A	chr17:17684198-17687932	H1-hESC	embryonic stem cell:	n/a	chr17:17686260-17686273 chr17:17684861-17684874 chr17:17686903-17686914 chr17:17687032-17687045 chr17:17686318-17686326 chr17:17684495-17684504 chr17:17685131-17685144
33	SIN3AK20	chr17:17686704-17687795	H1-hESC	embryonic stem cell:	n/a	n/a
34	TEAD4	chr17:17686420-17687926	ECC-1	luminal epithelium:	n/a	chr17:17687665-17687674
35	POLR2A	chr17:17687744-17687812	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:17685908..17688638-chr17:17739625..17744756,9	MCF-7	breast:
2	chr17:17623385..17625295-chr17:17685917..17688281,2	MCF-7	breast:
3	chr17:17581707..17587972-chr17:17684185..17691006,14	MCF-7	breast:
4	chr17:17583782..17586496-chr17:17685897..17688578,2	K562	blood:
5	chr17:17686873..17689808-chr17:17705092..17707202,2	MCF-7	breast:
6	chr17:17685362..17690405-chr17:17711256..17718354,8	MCF-7	breast:
7	chr17:17679491..17683222-chr17:17686874..17689759,4	MCF-7	breast:
8	chr17:17686748..17688338-chr17:17699379..17701394,2	MCF-7	breast:
9	chr17:17673495..17677565-chr17:17684022..17690653,6	MCF-7	breast:
10	chr17:17654471..17656540-chr17:17686884..17689253,2	K562	blood:
11	chr17:17685589..17688430-chr17:17722427..17724500,2	MCF-7	breast:
12	chr17:17685134..17688509-chr17:17722863..17726624,4	MCF-7	breast:
13	chr17:17685438..17688763-chr17:17737889..17741903,5	K562	blood:
14	chr17:17664602..17666200-chr17:17686548..17688309,2	MCF-7	breast:

Variant related genes	Relation type
SMCR5	TF binding region
ENSG00000237328	Chromatin interaction
ENSG00000264167	Chromatin interaction
ENSG00000072310	Chromatin interaction
ENSG00000207839	Chromatin interaction
ENSG00000226746	Chromatin interaction
ENSG00000108557	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12940418	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12940675	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12945601	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12950737	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4925108	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55767800	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs752579	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs941444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs941446	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv543241	chr17:17596222-17703059	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
18	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
22	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv532109	chr17:17630064-17700497	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
25	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
27	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
28	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
29	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
30	esv1804029	chr17:17669662-17714250	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
32	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
33	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
34	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
35	esv3439095	chr17:17685252-17688100	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17684200-17688000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr17:17684200-17688000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr17:17684200-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:17684400-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:17684600-17687800	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr17:17684800-17687800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr17:17684800-17688400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:17685000-17687800	Flanking Active TSS	Colonic Mucosa	Colon
9	chr17:17685000-17688000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr17:17685400-17687800	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr17:17685400-17688000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr17:17685600-17687800	Flanking Active TSS	NHEK	skin
13	chr17:17685600-17695400	Weak transcription	Dnd41	blood
14	chr17:17686000-17687800	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr17:17686000-17687800	Flanking Active TSS	NHLF	lung
16	chr17:17686000-17688000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:17686000-17690800	Enhancers	A549	lung
18	chr17:17686200-17687800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr17:17686200-17688200	Enhancers	Fetal Heart	heart
20	chr17:17686200-17689800	Enhancers	Fetal Brain Male	brain
21	chr17:17686400-17687800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
22	chr17:17686600-17687800	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr17:17686600-17687800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr17:17686800-17687800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:17686800-17687800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr17:17686800-17687800	Flanking Active TSS	Right Atrium	heart
27	chr17:17686800-17688000	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr17:17686800-17688000	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr17:17686800-17688000	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr17:17686800-17688000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr17:17686800-17688200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr17:17686800-17688200	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr17:17686800-17688400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr17:17686800-17689200	Enhancers	Spleen	Spleen
35	chr17:17687000-17687800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr17:17687000-17687800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:17687000-17687800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:17687000-17687800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr17:17687000-17688000	Flanking Active TSS	GM12878-XiMat	blood
40	chr17:17687000-17688200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr17:17687000-17688200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr17:17687000-17689600	Enhancers	Lung	lung
43	chr17:17687000-17691000	Enhancers	Gastric	stomach
44	chr17:17687200-17687800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr17:17687200-17687800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr17:17687200-17687800	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr17:17687200-17687800	Flanking Active TSS	Fetal Lung	lung
48	chr17:17687200-17687800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr17:17687200-17687800	Enhancers	HSMMtube	muscle
50	chr17:17687200-17688000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links