Variant report

Variant	rs12955881
Chromosome Location	chr18:45127335-45127336
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11661022	0.95[ASN][1000 genomes]
rs11663070	0.81[AMR][1000 genomes]
rs11663791	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11878044	0.94[ASN][1000 genomes]
rs12961333	0.81[AMR][1000 genomes]
rs36079943	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71352687	0.89[EUR][1000 genomes]
rs7238700	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330931	chr18:45126767-45127650	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45121600-45127800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:45121800-45127600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45122600-45128200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:45122600-45128400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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