Variant report

Variant	rs12956679
Chromosome Location	chr18:24384962-24384963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12958000	0.97[ASN][1000 genomes]
rs12958248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12960095	0.94[ASN][1000 genomes]
rs17611370	0.83[ASN][1000 genomes]
rs17612687	0.94[ASN][1000 genomes]
rs17684421	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24381600-24385000	Enhancers	Dnd41	blood
2	chr18:24382400-24385600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:24382800-24385800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:24382800-24385800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:24382800-24386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:24383800-24385000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:24384000-24385000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:24384600-24385000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr18:24384600-24385000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:24384600-24385000	Enhancers	Brain Cingulate Gyrus	brain
11	chr18:24384600-24385400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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