Variant report

Variant	rs12962546
Chromosome Location	chr18:8836197-8836198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8834969..8836760-chr18:8839023..8841481,2	MCF-7	breast:
2	chr18:8836082..8838682-chr18:8841919..8844783,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12458988	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12970680	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs631841	0.81[ASN][1000 genomes]
rs8090953	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8091169	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8822400-8836800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:8826200-8839600	Weak transcription	Brain Angular Gyrus	brain
3	chr18:8826400-8841600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:8827600-8839000	Weak transcription	Pancreas	Pancrea
5	chr18:8828400-8837000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:8829200-8839000	Weak transcription	Fetal Brain Male	brain
7	chr18:8829200-8839000	Weak transcription	Gastric	stomach
8	chr18:8832800-8841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr18:8834600-8836200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr18:8834600-8836200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr18:8834600-8836400	Enhancers	HSMM	muscle
12	chr18:8834800-8836200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:8834800-8836200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:8834800-8836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:8834800-8836200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr18:8835400-8836600	Enhancers	HSMMtube	muscle
17	chr18:8835600-8839400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr18:8835800-8836600	Enhancers	Stomach Smooth Muscle	stomach
19	chr18:8835800-8837200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr18:8835800-8844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:8836000-8839000	Weak transcription	Colon Smooth Muscle	Colon
22	chr18:8836000-8839200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:8836000-8841600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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