Variant report

Variant	rs12965634
Chromosome Location	chr18:29693230-29693231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12965536	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34563658	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36019706	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9964804	0.90[EUR][1000 genomes]

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29673400-29713800	Weak transcription	Spleen	Spleen
2	chr18:29673800-29702000	Weak transcription	Pancreas	Pancrea
3	chr18:29673800-29714000	Weak transcription	Esophagus	oesophagus
4	chr18:29673800-29714200	Weak transcription	Ovary	ovary
5	chr18:29673800-29715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29673800-29715200	Weak transcription	Lung	lung
7	chr18:29673800-29715800	Weak transcription	Colonic Mucosa	Colon
8	chr18:29673800-29717000	Weak transcription	HSMMtube	muscle
9	chr18:29674000-29712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:29674600-29695600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr18:29674600-29703000	Weak transcription	Osteobl	bone
12	chr18:29674600-29705600	Weak transcription	NHLF	lung
13	chr18:29675000-29694600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:29675000-29717200	Weak transcription	NH-A	brain
15	chr18:29676200-29697200	Weak transcription	NHDF-Ad	bronchial
16	chr18:29676400-29707000	Weak transcription	Brain Angular Gyrus	brain
17	chr18:29676600-29704800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:29676800-29697400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr18:29676800-29704600	Weak transcription	Fetal Brain Female	brain
20	chr18:29676800-29705000	Weak transcription	Brain Hippocampus Middle	brain
21	chr18:29676800-29717200	Weak transcription	Brain Germinal Matrix	brain
22	chr18:29677000-29696800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr18:29677000-29713800	Weak transcription	Small Intestine	intestine
24	chr18:29677000-29715600	Weak transcription	Fetal Heart	heart
25	chr18:29677000-29717000	Weak transcription	Aorta	Aorta
26	chr18:29677400-29694600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr18:29680000-29693400	Weak transcription	A549	lung
28	chr18:29683400-29694800	Weak transcription	Hela-S3	cervix
29	chr18:29687200-29713600	Strong transcription	Dnd41	blood
30	chr18:29688000-29695000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
31	chr18:29688200-29706400	Strong transcription	Fetal Thymus	thymus
32	chr18:29688200-29712400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:29688600-29693600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr18:29689400-29704600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr18:29689400-29713600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr18:29689600-29695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr18:29689800-29700000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr18:29689800-29705000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr18:29689800-29709400	Weak transcription	Gastric	stomach
40	chr18:29689800-29713200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr18:29690200-29706600	Weak transcription	Right Ventricle	heart
42	chr18:29690400-29694200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr18:29690400-29704800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr18:29690800-29710400	Weak transcription	Colon Smooth Muscle	Colon
45	chr18:29691000-29701400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr18:29691000-29709400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr18:29691000-29712400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr18:29691000-29712600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr18:29691200-29697000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr18:29691200-29697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links