Variant report

Variant rs12965777
Chromosome Location chr18:12289224-12289225
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:12287200-12289400 Flanking Active TSS Stomach Smooth Muscle stomach
2 chr18:12287400-12289400 Flanking Active TSS NHEK skin
3 chr18:12287600-12289400 Flanking Active TSS Adipose Nuclei Adipose
4 chr18:12287600-12289400 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
5 chr18:12287800-12289400 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
6 chr18:12288000-12289400 Flanking Active TSS K562 blood
7 chr18:12288200-12289400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr18:12288400-12289400 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr18:12288400-12289400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr18:12288400-12289400 Flanking Active TSS HMEC breast
11 chr18:12288400-12289400 Flanking Active TSS HSMM muscle
12 chr18:12288400-12289400 Flanking Active TSS HSMMtube muscle
13 chr18:12288400-12296200 Weak transcription Spleen Spleen
14 chr18:12288600-12289400 Bivalent Enhancer H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr18:12288600-12289400 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
16 chr18:12288600-12289400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
17 chr18:12288600-12289400 Flanking Bivalent TSS/Enh HUES64 Cell Line embryonic stem cell
18 chr18:12288600-12291800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr18:12288600-12291800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr18:12288800-12289400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr18:12288800-12289400 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
22 chr18:12288800-12289400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
23 chr18:12288800-12289400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr18:12288800-12289400 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
25 chr18:12288800-12289400 Bivalent Enhancer Fetal Stomach stomach
26 chr18:12288800-12289400 Enhancers Placenta Amnion Placenta Amnion
27 chr18:12289000-12289400 Active TSS ES-I3 Cell Line embryonic stem cell
28 chr18:12289000-12289400 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr18:12289000-12289400 Enhancers Fetal Heart heart
30 chr18:12289000-12289400 Enhancers Hela-S3 cervix
31 chr18:12289000-12290200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
32 chr18:12289000-12290200 Weak transcription Gastric stomach
33 chr18:12289000-12290400 Bivalent Enhancer H1 Cell Line embryonic stem cell
34 chr18:12289000-12290400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
35 chr18:12289000-12292600 Weak transcription Aorta Aorta
36 chr18:12289000-12304800 Weak transcription Pancreas Pancrea
37 chr18:12289200-12289400 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
38 chr18:12289200-12289400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
39 chr18:12289200-12289400 Bivalent Enhancer Duodenum Smooth Muscle Duodenum
40 chr18:12289200-12289400 Enhancers NH-A brain
41 chr18:12289200-12289400 Enhancers NHLF lung
42 chr18:12289200-12289400 Enhancers Osteobl bone
43 chr18:12289200-12289600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr18:12289200-12289600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
45 chr18:12289200-12290000 Weak transcription H9 Cell Line embryonic stem cell
46 chr18:12289200-12290000 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr18:12289200-12290000 Enhancers Colon Smooth Muscle Colon
48 chr18:12289200-12290000 Weak transcription NHDF-Ad bronchial
49 chr18:12289200-12290200 Bivalent Enhancer HepG2 liver
50 chr18:12289200-12290400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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