Variant report

Variant rs12980196
Chromosome Location chr19:56617252-56617253
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:56592600-56620000 Weak transcription HSMMtube muscle
2 chr19:56592800-56622600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr19:56593000-56631200 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr19:56597200-56619400 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr19:56600000-56619000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
6 chr19:56602800-56620000 Weak transcription NH-A brain
7 chr19:56603200-56619800 Weak transcription NHDF-Ad bronchial
8 chr19:56605200-56619800 Weak transcription HSMM muscle
9 chr19:56605200-56620000 Weak transcription Fetal Kidney kidney
10 chr19:56608200-56618600 ZNF genes & repeats Brain Germinal Matrix brain
11 chr19:56609600-56619600 Weak transcription Fetal Heart heart
12 chr19:56613200-56620000 Weak transcription H9 Cell Line embryonic stem cell
13 chr19:56613600-56619800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
14 chr19:56615000-56617400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr19:56615000-56617800 Weak transcription Dnd41 blood
16 chr19:56615000-56619600 Weak transcription Brain Substantia Nigra brain
17 chr19:56615000-56620200 Weak transcription Aorta Aorta
18 chr19:56615200-56617400 Enhancers Spleen Spleen
19 chr19:56615200-56617600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr19:56615800-56617400 Enhancers Esophagus oesophagus
21 chr19:56615800-56617600 Enhancers Left Ventricle heart
22 chr19:56616000-56617400 Enhancers Right Ventricle heart
23 chr19:56616000-56618000 Enhancers Stomach Mucosa stomach
24 chr19:56616000-56618200 Enhancers Primary T cells fromperipheralblood blood
25 chr19:56616000-56618200 Enhancers Adipose Nuclei Adipose
26 chr19:56616000-56618800 Enhancers Brain Anterior Caudate brain
27 chr19:56616000-56618800 Enhancers Brain Cingulate Gyrus brain
28 chr19:56616000-56619200 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr19:56616000-56619800 Enhancers Skeletal Muscle Female skeletal muscle
30 chr19:56616000-56626600 Enhancers Primary T helper cells fromperipheralblood blood
31 chr19:56616000-56627000 Enhancers Liver Liver
32 chr19:56616000-56627200 Enhancers H1 Cell Line embryonic stem cell
33 chr19:56616200-56617400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr19:56616200-56617400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr19:56616200-56617400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
36 chr19:56616200-56617600 Flanking Active TSS Stomach Smooth Muscle stomach
37 chr19:56616200-56617800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr19:56616200-56618000 Weak transcription K562 blood
39 chr19:56616200-56618200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
40 chr19:56616200-56618200 Genic enhancers Fetal Stomach stomach
41 chr19:56616200-56618800 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr19:56616200-56619400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr19:56616200-56620800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr19:56616400-56617800 Enhancers Primary monocytes fromperipheralblood blood
45 chr19:56616400-56617800 Enhancers Pancreas Pancrea
46 chr19:56616600-56617400 Enhancers Primary T regulatory cells fromperipheralblood blood
47 chr19:56616600-56617400 Enhancers Muscle Satellite Cultured Cells --
48 chr19:56616600-56617600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr19:56616600-56617600 Enhancers Primary mononuclear cells fromperipheralblood Blood
50 chr19:56616600-56617600 Enhancers Placenta Amnion Placenta Amnion

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