The 2.0 version of rSNPBase

Variant report

Variant rs12990925
Chromosome Location chr2:30637652-30637653
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30626000-30638000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
2 chr2:30627600-30647200 Weak transcription Brain Angular Gyrus brain
3 chr2:30628000-30644400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr2:30628400-30639800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr2:30629600-30638000 Enhancers Fetal Lung lung
6 chr2:30629800-30638800 Enhancers NHDF-Ad bronchial
7 chr2:30630200-30638000 Enhancers NHLF lung
8 chr2:30631200-30639800 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr2:30631600-30639800 Weak transcription Small Intestine intestine
10 chr2:30632200-30644600 Weak transcription Esophagus oesophagus
11 chr2:30633800-30638000 Enhancers Fetal Heart heart
12 chr2:30633800-30644000 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr2:30633800-30644000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr2:30634000-30639600 Weak transcription Aorta Aorta
15 chr2:30634000-30639800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:30634000-30644400 Weak transcription Placenta Amnion Placenta Amnion
17 chr2:30634800-30644000 Weak transcription Thymus Thymus
18 chr2:30635200-30643800 Weak transcription Fetal Thymus thymus
19 chr2:30636000-30639800 Weak transcription Adipose Nuclei Adipose
20 chr2:30636200-30639600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr2:30636200-30639800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr2:30636200-30639800 Weak transcription Fetal Intestine Large intestine
23 chr2:30636200-30639800 Weak transcription HSMMtube muscle
24 chr2:30636400-30639200 Weak transcription Left Ventricle heart
25 chr2:30636400-30639600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr2:30636400-30639800 Weak transcription Fetal Intestine Small intestine
27 chr2:30636400-30644000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr2:30636400-30644400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr2:30636400-30644400 Weak transcription Gastric stomach
30 chr2:30636600-30639600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr2:30636600-30639600 Weak transcription Right Atrium heart
32 chr2:30636600-30639800 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr2:30636800-30639200 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr2:30636800-30639800 Weak transcription Placenta Placenta
35 chr2:30636800-30644400 Weak transcription Fetal Muscle Trunk muscle
36 chr2:30637000-30639200 Weak transcription Stomach Smooth Muscle stomach
37 chr2:30637000-30639600 Weak transcription Colon Smooth Muscle Colon
38 chr2:30637000-30640200 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr2:30637200-30640000 Weak transcription Fetal Stomach stomach
40 chr2:30637200-30644000 Weak transcription Right Ventricle heart
41 chr2:30637400-30639000 Weak transcription Ovary ovary
42 chr2:30637400-30639200 Weak transcription Fetal Muscle Leg muscle
43 chr2:30637400-30639800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr2:30637400-30644200 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr2:30637400-30644600 Weak transcription Fetal Brain Male brain
46 chr2:30637600-30639800 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015