Variant report

Variant	rs12992745
Chromosome Location	chr2:212228115-212228116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10932372	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13003941	0.84[ASN][1000 genomes]
rs13007126	0.84[EUR][1000 genomes]
rs13018246	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821658	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1821659	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2033643	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3748962	0.83[ASN][1000 genomes]
rs7565960	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs934606	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212225800-212229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:212227200-212229400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:212227400-212228200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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