Variant report
| Variant | rs12992994 |
|---|---|
| Chromosome Location | chr2:125471257-125471258 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10178842 | 1.00[JPT][hapmap] |
| rs10179213 | 1.00[JPT][hapmap] |
| rs10183674 | 1.00[JPT][hapmap] |
| rs10184800 | 1.00[JPT][hapmap] |
| rs10185492 | 1.00[JPT][hapmap] |
| rs10208814 | 0.82[JPT][hapmap] |
| rs11123062 | 1.00[JPT][hapmap] |
| rs11680115 | 1.00[JPT][hapmap] |
| rs12468133 | 1.00[JPT][hapmap] |
| rs12619688 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13007184 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13021629 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13396871 | 1.00[JPT][hapmap] |
| rs13400133 | 1.00[JPT][hapmap] |
| rs13409512 | 1.00[JPT][hapmap] |
| rs13427244 | 1.00[JPT][hapmap] |
| rs17321250 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17321277 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17321284 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17321298 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17321305 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393209 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393216 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393223 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393237 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393244 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393271 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17393410 | 0.99[EUR][1000 genomes] |
| rs34958027 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35126713 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6713505 | 1.00[JPT][hapmap] |
| rs6736347 | 1.00[JPT][hapmap] |
| rs6760383 | 1.00[JPT][hapmap] |
| rs71428158 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs717601 | 1.00[JPT][hapmap] |
| rs72978566 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs730468 | 1.00[JPT][hapmap] |
| rs7582461 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv428727 | chr2:125372897-125512949 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
