Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10931444	0.88[ASN][1000 genomes]
rs10931445	0.88[ASN][1000 genomes]
rs11690233	0.84[ASN][1000 genomes]
rs12466564	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12473267	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12474520	0.83[ASN][1000 genomes]
rs12617376	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12623181	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12988305	0.89[ASN][1000 genomes]
rs13004255	0.85[ASN][1000 genomes]
rs1864242	0.89[ASN][1000 genomes]
rs2082020	0.90[ASN][1000 genomes]
rs2082021	0.90[ASN][1000 genomes]
rs2262781	0.86[ASN][1000 genomes]
rs2690743	0.81[ASN][1000 genomes]
rs35996430	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4853675	0.84[ASN][1000 genomes]
rs4853680	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs785248	0.81[ASN][1000 genomes]
rs785254	0.94[EUR][1000 genomes]
rs785255	0.94[EUR][1000 genomes]
rs785256	0.94[EUR][1000 genomes]
rs785260	0.94[EUR][1000 genomes]
rs785261	0.90[EUR][1000 genomes]
rs785264	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191014600-191015400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:191014600-191015400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:191014600-191015600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:191014800-191015400	Enhancers	Adipose Nuclei	Adipose
5	chr2:191015000-191015400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:191015000-191015400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:191015000-191015400	Enhancers	Brain Anterior Caudate	brain
8	chr2:191015000-191015600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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