Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180405427..180408122-chr2:180413189..180415887,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10169569	0.82[ASN][1000 genomes]
rs11888508	0.81[AMR][1000 genomes]
rs11894850	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399692	0.82[ASN][1000 genomes]
rs1515297	1.00[ASN][1000 genomes]
rs1515298	1.00[ASN][1000 genomes]
rs2203459	0.82[ASN][1000 genomes]
rs3112926	0.82[ASN][1000 genomes]
rs3112931	0.82[ASN][1000 genomes]
rs3112933	1.00[ASN][1000 genomes]
rs4267476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56201866	1.00[ASN][1000 genomes]
rs62179171	1.00[ASN][1000 genomes]
rs6433796	0.96[ASN][1000 genomes]
rs7579911	0.82[ASN][1000 genomes]
rs868271	0.82[ASN][1000 genomes]
rs868272	0.82[ASN][1000 genomes]
rs868273	0.82[ASN][1000 genomes]
rs868274	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875470	chr2:180400021-180432529	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv523865	chr2:180403128-180426764	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180403200-180408000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180403800-180408000	Weak transcription	Osteobl	bone
3	chr2:180403800-180408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180403800-180408600	Weak transcription	Fetal Kidney	kidney
5	chr2:180403800-180409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180404000-180408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:180404000-180410000	Strong transcription	Liver	Liver
8	chr2:180404200-180409800	Weak transcription	Gastric	stomach
9	chr2:180405400-180410600	Enhancers	HepG2	liver
10	chr2:180405800-180408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:180406800-180407800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:180407000-180411400	Weak transcription	Right Atrium	heart
13	chr2:180407400-180408800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:180407600-180408400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: