Variant report

Variant	rs13004738
Chromosome Location	chr2:149343644-149343645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:149341455..149344319-chr2:149350713..149353592,2	K562	blood:
2	chr2:149341455..149346543-chr2:149350713..149356199,4	K562	blood:

Variant related genes	Relation type
ENSG00000232238	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1020468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1031290	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10454124	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10928399	0.85[EUR][1000 genomes]
rs10928404	0.95[ASN][1000 genomes]
rs10928407	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12464036	0.89[ASN][1000 genomes]
rs12472738	0.97[ASN][1000 genomes]
rs12619201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13010027	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16828816	0.80[ASN][1000 genomes]
rs16828836	0.93[ASN][1000 genomes]
rs16828954	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16828967	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16829006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16829034	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34210886	0.85[ASN][1000 genomes]
rs34324924	0.80[ASN][1000 genomes]
rs34671855	0.90[ASN][1000 genomes]
rs34881950	0.80[ASN][1000 genomes]
rs35057193	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35076661	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35154707	0.95[ASN][1000 genomes]
rs35168772	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36067597	0.95[ASN][1000 genomes]
rs4972285	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4972369	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4972375	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4972380	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4972381	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4972383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6430323	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6709767	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6743835	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6746352	0.98[ASN][1000 genomes]
rs71413623	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs720844	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7571333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7578059	0.95[ASN][1000 genomes]
rs7590549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7597133	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7599758	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7606475	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs764386	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs930651	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs930652	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762913	chr2:149249683-149345487	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149336800-149344200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:149340800-149344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:149340800-149344000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:149341000-149343800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:149341000-149344000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:149341400-149344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:149342800-149343800	Enhancers	Fetal Lung	lung
8	chr2:149343600-149344800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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