Variant report

Variant	rs13006153
Chromosome Location	chr2:172167673-172167674
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1178010	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11891287	0.82[YRI][hapmap]
rs1733487	1.00[YRI][hapmap]
rs2080717	1.00[MKK][hapmap]
rs2193621	0.83[LWK][hapmap];0.82[YRI][hapmap]
rs888428	0.83[LWK][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172144200-172171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172151600-172168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:172154600-172168600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:172163800-172181400	Weak transcription	Gastric	stomach
5	chr2:172165600-172179400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:172166200-172168000	Enhancers	HepG2	liver
7	chr2:172166600-172168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:172167200-172169600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr2:172167200-172170400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr2:172167400-172168200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:172167400-172169600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr2:172167400-172169800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:172167400-172172400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:172167600-172172400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:172167600-172174000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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