Variant report

Variant	rs13008033
Chromosome Location	chr2:142293511-142293512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142291504..142294290-chr2:142295014..142296558,2	MCF-7	breast:
2	chr2:142288498..142290059-chr2:142292199..142295076,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10182090	0.87[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10188231	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10188429	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10496885	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496887	0.87[CEU][hapmap]
rs10928103	0.82[JPT][hapmap]
rs10928104	0.86[JPT][hapmap]
rs11677045	0.88[JPT][hapmap]
rs12052672	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12464897	0.88[JPT][hapmap]
rs12472911	0.87[JPT][hapmap]
rs12618990	0.88[JPT][hapmap]
rs13394458	0.82[JPT][hapmap]
rs13397685	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs13401279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13408702	0.81[JPT][hapmap]
rs13415966	0.82[JPT][hapmap]
rs13419567	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431681	0.87[CEU][hapmap]
rs1384660	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap]
rs1471673	0.87[CEU][hapmap]
rs1483148	0.88[JPT][hapmap]
rs1483149	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1483153	0.87[CEU][hapmap]
rs17551974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935991	0.88[JPT][hapmap]
rs3936044	0.88[JPT][hapmap]
rs3936045	0.88[JPT][hapmap]
rs4073067	0.82[JPT][hapmap]
rs4287717	0.87[CEU][hapmap]
rs4401160	0.80[JPT][hapmap]
rs6429884	0.88[JPT][hapmap]
rs6429914	0.87[CEU][hapmap]
rs6719851	0.85[ASW][hapmap];0.88[JPT][hapmap]
rs6733988	0.87[JPT][hapmap]
rs6739919	0.93[CEU][hapmap]
rs6752894	0.93[CEU][hapmap]
rs67536595	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574682	0.85[ASW][hapmap];0.88[JPT][hapmap]
rs7575223	0.87[CEU][hapmap]
rs7584391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604705	0.82[JPT][hapmap]
rs7605083	0.82[JPT][hapmap]
rs879272	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142292800-142293600	Enhancers	Primary B cells from cord blood	blood
2	chr2:142292800-142294000	Weak transcription	Brain Substantia Nigra	brain
3	chr2:142292800-142295200	Weak transcription	Fetal Heart	heart
4	chr2:142293000-142294000	Weak transcription	Brain Cingulate Gyrus	brain

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