Variant report

Variant	rs13008096
Chromosome Location	chr2:62792689-62792690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11125928	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11901966	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12713460	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4672533	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs6545956	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6709361	0.82[ASN][1000 genomes]
rs6750204	0.81[CHD][hapmap]
rs7577341	0.88[ASN][1000 genomes]
rs7577534	0.85[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7580494	0.85[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9973385	0.82[ASN][1000 genomes]
rs9973891	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv834226	chr2:62745027-62894013	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3336776	chr2:62747914-62813461	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv874232	chr2:62758044-62906084	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv834237	chr2:62762743-62926036	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13008096	XPO1	cis	cerebellum	SCAN
rs13008096	TMEM17	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62791000-62796400	Enhancers	HepG2	liver
2	chr2:62791400-62794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:62791600-62793000	Enhancers	Ovary	ovary
4	chr2:62791800-62792800	Enhancers	Liver	Liver
5	chr2:62792200-62794600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:62792200-62795200	Weak transcription	Fetal Intestine Large	intestine
7	chr2:62792400-62793800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:62792400-62794800	Weak transcription	Pancreas	Pancrea
9	chr2:62792600-62793000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:62792600-62793000	Enhancers	NHDF-Ad	bronchial
11	chr2:62792600-62793400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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