Variant report

Variant	rs13008169
Chromosome Location	chr2:210240990-210240991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10514642	0.82[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs10514643	0.82[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs11892351	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11895054	1.00[EUR][1000 genomes]
rs11898043	0.81[EUR][1000 genomes]
rs12999670	0.90[GIH][hapmap]
rs13023264	0.82[AFR][1000 genomes]
rs13024490	0.82[AFR][1000 genomes]
rs13025539	0.82[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs13027724	0.82[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs13028173	0.82[AFR][1000 genomes]
rs13032445	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1446590	1.00[EUR][1000 genomes]
rs16842843	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16842900	0.90[GIH][hapmap]
rs16842904	0.90[GIH][hapmap]
rs16842906	0.90[GIH][hapmap]
rs16842909	0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs16842929	0.85[GIH][hapmap]
rs16842934	0.86[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17237719	0.91[TSI][hapmap]
rs17308504	0.82[TSI][hapmap]
rs17316904	1.00[MEX][hapmap];0.91[TSI][hapmap]
rs35273017	0.85[EUR][1000 genomes]
rs35845242	1.00[EUR][1000 genomes]
rs59412601	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875764	chr2:210195717-210240990	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210234000-210242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210239200-210241200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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