Variant report

Variant	rs13008406
Chromosome Location	chr2:36844806-36844807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12464610	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4670153	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4670573	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv2681	chr2:36822990-36848171	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36841200-36845200	Enhancers	Placenta	Placenta
2	chr2:36841600-36846600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:36842200-36845200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:36842600-36845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:36842800-36847400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:36843000-36845800	Weak transcription	Osteobl	bone
7	chr2:36843600-36845200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:36843600-36846000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:36843600-36846200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:36843800-36845000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:36843800-36846000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:36844000-36845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:36844000-36845800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:36844200-36845000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:36844400-36845000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:36844600-36846400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:36844800-36845800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:36844800-36845800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:36844800-36849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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