Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10189597	0.81[EUR][1000 genomes]
rs12993178	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13010861	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13013030	0.82[AMR][1000 genomes]
rs13398209	0.81[EUR][1000 genomes]
rs13398411	0.81[EUR][1000 genomes]
rs17748674	0.82[AMR][1000 genomes]
rs17748692	0.82[AMR][1000 genomes]
rs34038887	0.81[EUR][1000 genomes]
rs34073663	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34428242	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34434902	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34687728	0.83[AFR][1000 genomes]
rs7583147	0.81[EUR][1000 genomes]
rs7595063	0.81[EUR][1000 genomes]
rs7598071	0.81[EUR][1000 genomes]
rs9630977	0.81[EUR][1000 genomes]
rs9631001	0.81[EUR][1000 genomes]
rs9677274	0.81[EUR][1000 genomes]
rs9677282	0.81[EUR][1000 genomes]
rs9973317	0.81[EUR][1000 genomes]
rs9973465	0.80[EUR][1000 genomes]
rs9973473	0.81[EUR][1000 genomes]
rs9973633	0.81[EUR][1000 genomes]
rs9973787	0.81[EUR][1000 genomes]
rs9973848	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210725200-210737200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210727800-210737400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210728400-210730000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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