Variant report

Variant	rs13010612
Chromosome Location	chr2:233554720-233554721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233545290..233548308-chr2:233551480..233555514,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34388285	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233538200-233561400	Weak transcription	Right Ventricle	heart
2	chr2:233546800-233561400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:233547400-233560600	Weak transcription	Placenta	Placenta
4	chr2:233547400-233561200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:233547800-233561400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:233548600-233561600	Weak transcription	Aorta	Aorta
7	chr2:233549200-233561200	Weak transcription	Brain Substantia Nigra	brain
8	chr2:233552200-233555400	Enhancers	Fetal Muscle Leg	muscle
9	chr2:233553000-233561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:233553800-233555000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:233554000-233555000	Enhancers	HSMMtube	muscle
12	chr2:233554200-233554800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:233554200-233554800	Enhancers	HSMM	muscle
14	chr2:233554200-233555000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:233554200-233555000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:233554200-233555000	Enhancers	Left Ventricle	heart
17	chr2:233554400-233554800	Enhancers	Brain Hippocampus Middle	brain
18	chr2:233554400-233554800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:233554400-233555000	Enhancers	Fetal Heart	heart
20	chr2:233554400-233555000	Enhancers	Pancreas	Pancrea
21	chr2:233554400-233555200	Enhancers	Brain Germinal Matrix	brain
22	chr2:233554600-233556200	Weak transcription	Right Atrium	heart
23	chr2:233554600-233561400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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