Variant report

Variant	rs13011038
Chromosome Location	chr2:11072133-11072134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11057377..11060185-chr2:11071124..11073413,3	MCF-7	breast:
2	chr2:11051873..11054967-chr2:11069156..11073328,3	MCF-7	breast:
3	chr2:11070868..11073523-chr2:11073573..11076580,4	MCF-7	breast:
4	chr2:11050045..11052988-chr2:11069931..11072758,2	MCF-7	breast:
5	chr2:11063730..11067649-chr2:11070741..11076086,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162975	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11676836	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016124	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1453087	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817618	chr2:11055298-11075754	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv469438	chr2:11055298-11085744	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv580970	chr2:11055298-11085744	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv523537	chr2:11061156-11075317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11054400-11072400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:11065000-11072400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:11065200-11074600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:11066800-11075400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:11070400-11073600	Enhancers	Fetal Brain Male	brain
6	chr2:11070600-11072200	Enhancers	Fetal Brain Female	brain
7	chr2:11070600-11073600	Enhancers	NHLF	lung
8	chr2:11070600-11074200	Enhancers	NHDF-Ad	bronchial
9	chr2:11070600-11078400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:11070800-11072400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:11070800-11072800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:11070800-11073600	Enhancers	Hela-S3	cervix
13	chr2:11070800-11074000	Enhancers	Osteobl	bone
14	chr2:11070800-11077000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:11070800-11077600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:11071000-11072400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:11071000-11072400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:11071000-11074600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:11071000-11075000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:11071000-11076200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:11071200-11073200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:11071200-11073400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:11071200-11073400	Enhancers	NH-A	brain
24	chr2:11071200-11074800	Weak transcription	Brain Germinal Matrix	brain
25	chr2:11071400-11075200	Enhancers	A549	lung
26	chr2:11071600-11073400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:11071800-11072200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr2:11071800-11072200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr2:11071800-11074400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:11071800-11076400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:11072000-11072200	ZNF genes & repeats	Spleen	Spleen
32	chr2:11072000-11072400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:11072000-11073400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:11072000-11074000	Enhancers	Fetal Muscle Leg	muscle

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