Variant report

Variant	rs13014140
Chromosome Location	chr2:97290167-97290168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:96874364..96876092-chr2:97288448..97290942,2	K562	blood:
2	chr2:97288040..97290630-chr2:97292751..97295463,2	MCF-7	breast:
3	chr2:97289242..97292725-chr2:97301330..97303920,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084090	Chromatin interaction
ENSG00000114982	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12990081	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	esv3460902	chr2:97138421-97459342	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv3460903	chr2:97138421-97459342	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv999871	chr2:97157196-97407711	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv535829	chr2:97157196-97407711	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv469775	chr2:97240926-97412491	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv482586	chr2:97240926-97412491	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv834306	chr2:97241115-97412938	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97258200-97302800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:97261200-97301600	Strong transcription	Fetal Thymus	thymus
3	chr2:97266200-97291000	Strong transcription	Fetal Stomach	stomach
4	chr2:97273200-97291800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:97275000-97298600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:97277200-97291800	Weak transcription	Stomach Mucosa	stomach
7	chr2:97278600-97293200	Weak transcription	Small Intestine	intestine
8	chr2:97279800-97293200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:97281600-97291800	Strong transcription	Fetal Muscle Leg	muscle
10	chr2:97283000-97293800	Weak transcription	Fetal Heart	heart
11	chr2:97283000-97296400	Weak transcription	Psoas Muscle	Psoas
12	chr2:97283200-97293400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:97283400-97294600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:97283600-97293800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:97285200-97296600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:97285400-97290800	Weak transcription	HSMMtube	muscle
17	chr2:97285400-97291800	Weak transcription	HMEC	breast
18	chr2:97285400-97292000	Weak transcription	Aorta	Aorta
19	chr2:97285400-97293400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr2:97285400-97293600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:97285400-97293600	Weak transcription	Ovary	ovary
22	chr2:97285400-97294000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:97285400-97296800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:97285400-97302400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:97285600-97290800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:97285600-97291000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:97285600-97291000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:97285600-97291200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:97285600-97291600	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:97285600-97293200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:97285600-97293200	Weak transcription	Lung	lung
32	chr2:97285600-97293200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr2:97285600-97293400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr2:97285600-97293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr2:97285600-97293600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr2:97285600-97293800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:97285600-97293800	Weak transcription	Esophagus	oesophagus
38	chr2:97285600-97293800	Weak transcription	Pancreas	Pancrea
39	chr2:97285600-97295400	Weak transcription	NHLF	lung
40	chr2:97285600-97296400	Weak transcription	Gastric	stomach
41	chr2:97285600-97296800	Weak transcription	Colonic Mucosa	Colon
42	chr2:97285800-97291000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:97285800-97291400	Weak transcription	NHEK	skin
44	chr2:97285800-97293400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr2:97285800-97293600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr2:97285800-97293600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr2:97285800-97293600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:97285800-97293600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr2:97285800-97293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:97285800-97296400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links