Variant report

Variant	rs13014447
Chromosome Location	chr2:55999016-55999017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56210563	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv999962	chr2:55976574-56011517	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv997683	chr2:55976574-56013875	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv431080	chr2:55988293-56011517	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55989400-56015000	Weak transcription	Aorta	Aorta
2	chr2:55996400-55999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:55996400-55999200	Weak transcription	Osteobl	bone
4	chr2:55996800-55999400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:55997000-55999200	Weak transcription	HMEC	breast
6	chr2:55997000-55999200	Weak transcription	HSMM	muscle
7	chr2:55997000-55999200	Weak transcription	NHEK	skin
8	chr2:55997200-55999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:55997200-55999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:55997600-56000000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:55998200-55999200	Enhancers	A549	lung
12	chr2:55998200-56000200	Enhancers	HUVEC	blood vessel
13	chr2:55998400-55999200	Weak transcription	HSMMtube	muscle
14	chr2:55998400-56000000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:55999000-55999800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:55999000-55999800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:55999000-55999800	Enhancers	Brain Anterior Caudate	brain
18	chr2:55999000-56000000	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links