Variant report

Variant	rs13015421
Chromosome Location	chr2:40408811-40408812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12997800	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13010488	0.89[EUR][1000 genomes]
rs13012123	1.00[EUR][1000 genomes]
rs13015844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13017294	1.00[EUR][1000 genomes]
rs13021278	1.00[EUR][1000 genomes]
rs13029031	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13029172	1.00[EUR][1000 genomes]
rs13029927	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13035066	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34078731	1.00[EUR][1000 genomes]
rs34210996	1.00[EUR][1000 genomes]
rs34238309	1.00[EUR][1000 genomes]
rs34303202	1.00[EUR][1000 genomes]
rs34658168	1.00[EUR][1000 genomes]
rs34661498	1.00[EUR][1000 genomes]
rs35108069	0.82[EUR][1000 genomes]
rs35372653	1.00[EUR][1000 genomes]
rs35432865	1.00[EUR][1000 genomes]
rs35746759	1.00[EUR][1000 genomes]
rs35774927	1.00[EUR][1000 genomes]
rs71439276	1.00[EUR][1000 genomes]
rs71439277	1.00[EUR][1000 genomes]
rs71439278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71439279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873902	chr2:40231282-40466268	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1004092	chr2:40264608-40451701	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000572	chr2:40271958-40458911	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv535654	chr2:40271958-40458911	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv581502	chr2:40273903-40459645	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv873904	chr2:40292289-40466268	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv873910	chr2:40391907-40466268	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1851152	chr2:40393223-40512023	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40392000-40413200	Weak transcription	Fetal Brain Female	brain
2	chr2:40393000-40420000	Weak transcription	Fetal Kidney	kidney
3	chr2:40393600-40416800	Weak transcription	Fetal Stomach	stomach
4	chr2:40400600-40426800	Weak transcription	Osteobl	bone
5	chr2:40405400-40430000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:40405600-40409200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:40405600-40409400	Weak transcription	Aorta	Aorta
8	chr2:40405600-40410600	Weak transcription	Left Ventricle	heart
9	chr2:40405600-40421800	Weak transcription	Right Ventricle	heart
10	chr2:40406400-40416600	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:40406600-40409800	Weak transcription	Thymus	Thymus
12	chr2:40406600-40416800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:40407200-40409000	Weak transcription	Fetal Thymus	thymus
14	chr2:40407200-40410600	Weak transcription	HSMMtube	muscle
15	chr2:40407200-40419800	Weak transcription	HSMM	muscle
16	chr2:40407600-40410000	Weak transcription	Dnd41	blood
17	chr2:40408800-40412200	Enhancers	Fetal Heart	heart

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