Variant report

Variant	rs13015570
Chromosome Location	chr1:80802005-80802006
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10497026	0.81[AMR][1000 genomes]
rs10497029	0.91[AMR][1000 genomes]
rs12465610	0.87[AMR][1000 genomes]
rs12469509	0.85[AMR][1000 genomes]
rs12469621	0.84[AMR][1000 genomes]
rs12472459	0.83[AMR][1000 genomes]
rs12691776	0.90[AMR][1000 genomes]
rs13001158	0.83[AMR][1000 genomes]
rs13006721	0.85[AMR][1000 genomes]
rs13013887	0.83[AMR][1000 genomes]
rs13015552	0.85[AMR][1000 genomes]
rs13029714	0.94[AMR][1000 genomes]
rs13032303	0.92[AMR][1000 genomes]
rs16828270	0.92[AMR][1000 genomes]
rs16828354	0.92[AMR][1000 genomes]
rs2122386	0.85[AMR][1000 genomes]
rs2382211	0.93[AMR][1000 genomes]
rs4972332	0.94[AMR][1000 genomes]
rs4972334	0.85[AMR][1000 genomes]
rs62183898	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7568811	0.93[AMR][1000 genomes]
rs7574180	0.89[AMR][1000 genomes]
rs7580733	0.82[AMR][1000 genomes]
rs7583759	0.85[AMR][1000 genomes]
rs7595286	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012286	chr1:80057078-81005153	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv535018	chr1:80057078-81005153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1000792	chr1:80076146-81015283	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv546661	chr1:80656114-81156849	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1011060	chr1:80745999-80972049	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv871859	chr1:80752283-80908148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1014302	chr1:80755143-80803574	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:80796800-80804600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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