Variant report

Variant	rs13015612
Chromosome Location	chr2:38940316-38940317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:38935545..38937747-chr2:38938449..38940333,2	K562	blood:
2	chr2:38938757..38943721-chr2:38976171..38978586,4	K562	blood:
3	chr2:38827268..38830254-chr2:38939172..38940756,3	K562	blood:
4	chr2:38938428..38940592-chr2:38945131..38949430,3	K562	blood:

Variant related genes	Relation type
ENSG00000143889	Chromatin interaction
ENSG00000235586	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10196452	0.81[CEU][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap]
rs12617755	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13015907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541877	1.00[GIH][hapmap];0.82[MEX][hapmap]
rs3112190	1.00[GIH][hapmap]
rs6736380	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	nsv961401	chr2:38924660-38941942	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1800555	chr2:38929745-38950126	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1830359	chr2:38929745-38950126	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38894400-38960600	Weak transcription	Brain Substantia Nigra	brain
2	chr2:38894800-38949400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:38905000-38947600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:38909200-38947800	Weak transcription	Right Ventricle	heart
5	chr2:38909400-38960600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:38909600-38947800	Weak transcription	Brain Anterior Caudate	brain
7	chr2:38910000-38948000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:38914600-38948000	Weak transcription	Spleen	Spleen
9	chr2:38915800-38947200	Weak transcription	Ovary	ovary
10	chr2:38918000-38949400	Weak transcription	Primary B cells from cord blood	blood
11	chr2:38918600-38947600	Weak transcription	Hela-S3	cervix
12	chr2:38918600-38956800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:38920200-38942600	Weak transcription	Aorta	Aorta
14	chr2:38920400-38947800	Weak transcription	Esophagus	oesophagus
15	chr2:38921400-38947400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:38921600-38942800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:38927400-38947600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr2:38927600-38957000	Weak transcription	Brain Hippocampus Middle	brain
19	chr2:38928200-38947800	Weak transcription	Stomach Mucosa	stomach
20	chr2:38928800-38971600	Weak transcription	Small Intestine	intestine
21	chr2:38930000-38946800	Weak transcription	Right Atrium	heart
22	chr2:38930000-38956600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr2:38930600-38947000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:38930600-38965000	Weak transcription	Gastric	stomach
25	chr2:38930800-38943200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:38931000-38943000	Weak transcription	NHLF	lung
27	chr2:38931000-38943200	Weak transcription	NHDF-Ad	bronchial
28	chr2:38931200-38948600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:38931600-38944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:38932400-38947600	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:38932600-38942800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:38932600-38942800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:38932600-38943000	Weak transcription	Osteobl	bone
34	chr2:38932600-38947800	Weak transcription	Pancreas	Pancrea
35	chr2:38932800-38947000	Weak transcription	Lung	lung
36	chr2:38932800-38956800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:38933200-38947600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:38933800-38947800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr2:38934800-38947600	Weak transcription	K562	blood
40	chr2:38936200-38940800	Strong transcription	Liver	Liver
41	chr2:38936200-38941000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:38936200-38942400	Weak transcription	A549	lung
43	chr2:38936400-38957200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr2:38936400-38960600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr2:38936400-38968400	Weak transcription	Colonic Mucosa	Colon
46	chr2:38936600-38944600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr2:38936800-38942800	Strong transcription	HepG2	liver
48	chr2:38936800-38946000	Weak transcription	Thymus	Thymus
49	chr2:38937000-38940400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:38937200-38956600	Weak transcription	Fetal Brain Female	brain

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