Variant report

Variant	rs13017628
Chromosome Location	chr2:169641875-169641876
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10188453	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12692886	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1402840	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs16855872	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3845727	1.00[CHB][hapmap]
rs4233821	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4668103	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6433092	0.86[ASN][1000 genomes]
rs7558965	1.00[CHB][hapmap]
rs8304	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169634200-169643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:169638200-169654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:169638800-169643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:169639400-169643000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:169639400-169643600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:169641400-169642000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:169641400-169642000	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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