Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10928201	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11888667	0.85[ASN][1000 genomes]
rs12993352	0.89[EUR][1000 genomes]
rs12995797	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12998885	0.90[ASN][1000 genomes]
rs13005318	0.94[EUR][1000 genomes]
rs13006296	0.97[EUR][1000 genomes]
rs13012919	0.89[EUR][1000 genomes]
rs13029182	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13035128	0.89[EUR][1000 genomes]
rs13035981	0.88[ASN][1000 genomes]
rs16823284	0.90[ASN][1000 genomes]
rs1900590	0.90[ASN][1000 genomes]
rs35563346	0.89[EUR][1000 genomes]
rs36045907	0.83[ASN][1000 genomes]
rs56354994	0.97[EUR][1000 genomes]
rs61567202	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6430047	0.90[ASN][1000 genomes]
rs6708534	0.97[ASN][1000 genomes]
rs6751756	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6754251	0.90[ASN][1000 genomes]
rs7607751	0.97[EUR][1000 genomes]
rs787163	0.81[ASN][1000 genomes]
rs9636220	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144632600-144635200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144633200-144636400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:144633200-144636600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:144633400-144634600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:144633400-144636000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:144633400-144636000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:144633400-144636200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:144633600-144634600	Weak transcription	Fetal Brain Male	brain
9	chr2:144633600-144634800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:144634000-144635000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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