Variant report

Variant	rs13019020
Chromosome Location	chr2:73354371-73354372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10865396	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11126389	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11126390	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11686557	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11693673	0.97[ASN][1000 genomes]
rs12614059	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13018842	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13400920	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs13403757	0.80[JPT][hapmap]
rs13403781	0.80[JPT][hapmap]
rs1430349	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs17008631	0.80[JPT][hapmap]
rs1864488	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1992133	0.83[JPT][hapmap]
rs2060002	0.89[ASN][1000 genomes]
rs35131031	0.84[ASN][1000 genomes]
rs4852908	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57726945	0.81[ASN][1000 genomes]
rs6546801	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6710755	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7559340	0.83[JPT][hapmap]
rs7567413	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7570459	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7596830	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7602651	0.84[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73345600-73356200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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