Variant report

Variant	rs13021341
Chromosome Location	chr2:144531137-144531138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12995474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59688630	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740197	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13021341	ZEB2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144527400-144531200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:144527800-144531200	Weak transcription	Primary T cells from cord blood	blood
3	chr2:144528000-144531400	Weak transcription	Dnd41	blood
4	chr2:144528000-144534800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:144528200-144531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:144528400-144533600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:144529800-144532600	Weak transcription	Fetal Lung	lung
8	chr2:144529800-144535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:144530200-144535600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:144530600-144532200	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links