Variant report

Variant	rs13021823
Chromosome Location	chr2:233686862-233686863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233679964..233682809-chr2:233685559..233687469,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10210953	0.84[EUR][1000 genomes]
rs1078323	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688166	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11689851	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12619195	0.86[EUR][1000 genomes]
rs12993791	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001052	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007579	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13009957	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13024330	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1446309	0.93[ASN][1000 genomes]
rs17164	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289911	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2344611	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2344613	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2592104	0.87[EUR][1000 genomes]
rs283465	0.91[EUR][1000 genomes]
rs283467	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs283487	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34707169	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35491427	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144795	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4144797	0.82[EUR][1000 genomes]
rs4973563	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62193271	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6716488	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7560115	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs778371	0.82[ASN][1000 genomes]
rs921055	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974321	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv460134	chr2:233639909-233714686	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv584696	chr2:233639909-233714686	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv584697	chr2:233684097-233733352	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233655600-233689200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:233660800-233688600	Weak transcription	Psoas Muscle	Psoas
3	chr2:233665000-233692600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:233665800-233734200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:233667600-233726400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:233667800-233693400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:233669000-233701800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:233669200-233690400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:233669400-233690400	Strong transcription	Dnd41	blood
10	chr2:233669400-233703600	Strong transcription	Liver	Liver
11	chr2:233669600-233690400	Strong transcription	Placenta	Placenta
12	chr2:233669600-233690800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:233669800-233692000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:233670000-233690800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:233670000-233701600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:233670200-233688800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:233670200-233692200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:233670200-233699600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr2:233670200-233702600	Strong transcription	HepG2	liver
20	chr2:233670600-233692600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:233670800-233690400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr2:233670800-233700200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr2:233671000-233687000	Strong transcription	Fetal Thymus	thymus
24	chr2:233671000-233692000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:233671000-233700400	Strong transcription	Fetal Intestine Large	intestine
26	chr2:233671200-233690800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:233678200-233698200	Weak transcription	Stomach Mucosa	stomach
28	chr2:233679400-233693400	Strong transcription	HSMM	muscle
29	chr2:233679600-233692200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:233680400-233687200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr2:233680600-233688200	Weak transcription	Aorta	Aorta
32	chr2:233680600-233688400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:233680600-233688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:233680600-233698600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr2:233681600-233702400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr2:233681800-233694800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:233681800-233695400	Weak transcription	Esophagus	oesophagus
38	chr2:233681800-233695600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:233681800-233695600	Weak transcription	Right Ventricle	heart
40	chr2:233681800-233695800	Weak transcription	Gastric	stomach
41	chr2:233681800-233702200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr2:233682000-233688000	Weak transcription	NHLF	lung
43	chr2:233682000-233688400	Weak transcription	Colonic Mucosa	Colon
44	chr2:233682000-233695400	Weak transcription	Small Intestine	intestine
45	chr2:233682400-233689400	Weak transcription	K562	blood
46	chr2:233682600-233687800	Weak transcription	Fetal Kidney	kidney
47	chr2:233682600-233688800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr2:233682800-233688200	Weak transcription	Brain Angular Gyrus	brain
49	chr2:233682800-233688200	Weak transcription	Brain Substantia Nigra	brain
50	chr2:233682800-233688200	Weak transcription	Fetal Muscle Leg	muscle

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