Variant report

Variant	rs13022372
Chromosome Location	chr2:30521763-30521764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11677980	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11678328	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684717	1.00[ASN][1000 genomes]
rs11690407	1.00[ASN][1000 genomes]
rs11694633	1.00[ASN][1000 genomes]
rs13007792	1.00[ASN][1000 genomes]
rs6755863	1.00[ASN][1000 genomes]
rs71444455	1.00[ASN][1000 genomes]
rs71444456	1.00[ASN][1000 genomes]
rs72789617	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3421324	chr2:30517948-30522246	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30496600-30524200	Weak transcription	Right Atrium	heart
2	chr2:30511200-30523200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:30513800-30522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:30513800-30523400	Weak transcription	Thymus	Thymus
5	chr2:30514000-30522800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:30516600-30522600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:30516600-30522800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:30516800-30522000	Weak transcription	Left Ventricle	heart
9	chr2:30516800-30522600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:30516800-30523000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:30516800-30524200	Weak transcription	Lung	lung
12	chr2:30517000-30522200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:30517200-30522600	Weak transcription	HSMMtube	muscle
14	chr2:30517400-30522800	Weak transcription	NHLF	lung
15	chr2:30518000-30522800	Weak transcription	NH-A	brain
16	chr2:30518200-30524600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:30519400-30522800	Weak transcription	Right Ventricle	heart
18	chr2:30519800-30523000	Weak transcription	K562	blood
19	chr2:30520000-30522200	Enhancers	Primary B cells from peripheral blood	blood
20	chr2:30520200-30522600	Enhancers	Fetal Heart	heart
21	chr2:30520600-30522200	Enhancers	Primary B cells from cord blood	blood
22	chr2:30520800-30522800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:30521400-30522000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:30521400-30522400	Enhancers	GM12878-XiMat	blood

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