Variant report

Variant	rs13023294
Chromosome Location	chr2:86812177-86812178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11127041	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs13394423	1.00[CHB][hapmap]
rs13424350	1.00[CHD][hapmap]
rs2276624	1.00[CHB][hapmap]
rs3755000	1.00[CHB][hapmap]
rs3821013	1.00[CHB][hapmap]
rs41374146	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13023294	TMSB10	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86810200-86812600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:86810400-86812600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:86810600-86812600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:86810600-86812600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:86810800-86812200	Enhancers	Primary T cells from cord blood	blood
6	chr2:86810800-86812200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:86810800-86812200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:86810800-86812200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:86810800-86812200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:86810800-86812600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:86811000-86812600	Enhancers	Primary hematopoietic stem cells	blood
12	chr2:86811000-86812600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr2:86811400-86812800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:86811600-86812600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr2:86811600-86812800	Enhancers	HUVEC	blood vessel
16	chr2:86811800-86812200	Enhancers	GM12878-XiMat	blood
17	chr2:86811800-86812400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr2:86811800-86812400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:86811800-86812600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr2:86812000-86813800	Weak transcription	Dnd41	blood
21	chr2:86812000-86814200	Weak transcription	K562	blood

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