Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142874759..142876508-chr2:142879340..142881781,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011862	0.82[EUR][1000 genomes]
rs10186258	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10203924	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10496913	0.88[ASN][1000 genomes]
rs10803489	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11683745	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12472834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12988578	0.87[ASN][1000 genomes]
rs1349219	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349220	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1349221	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1375609	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1375611	0.96[ASN][1000 genomes]
rs1375612	0.85[ASN][1000 genomes]
rs1375613	0.86[ASN][1000 genomes]
rs1375614	0.97[ASN][1000 genomes]
rs1900935	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1900936	0.99[ASN][1000 genomes]
rs2167053	0.84[EUR][1000 genomes]
rs2290140	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381203	0.85[ASN][1000 genomes]
rs4662389	0.85[EUR][1000 genomes]
rs4662396	0.97[ASN][1000 genomes]
rs62155638	0.85[ASN][1000 genomes]
rs6707136	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7565655	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9287332	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142870000-142878400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:142870800-142877400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:142874200-142875200	Weak transcription	Brain Substantia Nigra	brain
4	chr2:142874600-142875200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: