Variant report

Variant	rs13025565
Chromosome Location	chr2:205272950-205272951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1156250	0.86[AMR][1000 genomes]
rs13397320	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16841256	0.86[AFR][1000 genomes]
rs4675452	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55637015	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435236	0.95[ASN][1000 genomes]
rs6708542	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205270800-205273000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:205271600-205273000	Enhancers	Fetal Intestine Large	intestine
3	chr2:205271600-205273200	Enhancers	Hela-S3	cervix
4	chr2:205271600-205273200	Enhancers	HepG2	liver
5	chr2:205272200-205273400	Enhancers	Fetal Intestine Small	intestine
6	chr2:205272800-205273200	Flanking Active TSS	K562	blood
7	chr2:205272800-205273600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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