Variant report

Variant	rs13026187
Chromosome Location	chr2:128277568-128277569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128266970..128268889-chr2:128276215..128277935,2	K562	blood:
2	chr2:128275312..128279572-chr2:128410107..128412898,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10432384	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10460269	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10928770	0.80[AMR][1000 genomes]
rs11690009	0.80[ASN][1000 genomes]
rs11694581	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12463949	0.86[ASN][1000 genomes]
rs12466957	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12475191	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12475389	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12476558	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13013022	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13029611	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13035004	0.83[ASN][1000 genomes]
rs1968396	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2052953	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732207	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4507043	0.84[ASN][1000 genomes]
rs4662733	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56398807	0.86[ASN][1000 genomes]
rs7583571	0.86[ASN][1000 genomes]
rs7590705	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128262600-128283000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:128263000-128281200	Weak transcription	Fetal Kidney	kidney
3	chr2:128263200-128282800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:128266000-128282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:128267200-128282000	Weak transcription	Fetal Brain Male	brain
6	chr2:128267600-128281200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:128267600-128282000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:128268400-128281600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:128268600-128281600	Strong transcription	Fetal Thymus	thymus
10	chr2:128270200-128282600	Weak transcription	Small Intestine	intestine
11	chr2:128271000-128278600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:128271400-128281400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:128271400-128281800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:128271400-128281800	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr2:128271600-128279000	Strong transcription	Liver	Liver
16	chr2:128271800-128281400	Strong transcription	Fetal Intestine Large	intestine
17	chr2:128272000-128281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:128272400-128282800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:128272400-128282800	Weak transcription	Colonic Mucosa	Colon
20	chr2:128272600-128280600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:128272600-128281000	Strong transcription	HepG2	liver
22	chr2:128272800-128282800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:128273400-128278600	Strong transcription	Fetal Lung	lung
24	chr2:128273600-128281200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:128273600-128281200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr2:128273600-128281400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:128273600-128281600	Strong transcription	Primary B cells from cord blood	blood
28	chr2:128273600-128281800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:128273600-128281800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:128273600-128282800	Weak transcription	Gastric	stomach
31	chr2:128273800-128277600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:128273800-128279400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:128273800-128279600	Weak transcription	Esophagus	oesophagus
34	chr2:128273800-128281600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr2:128273800-128281600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:128274000-128278000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:128274000-128281600	Weak transcription	Fetal Heart	heart
38	chr2:128274000-128281800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr2:128274000-128282200	Weak transcription	Pancreas	Pancrea
40	chr2:128274200-128277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:128274200-128280600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr2:128274200-128281200	Weak transcription	Brain Angular Gyrus	brain
43	chr2:128274200-128281400	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:128274200-128281600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:128274200-128281800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:128274200-128281800	Strong transcription	K562	blood
47	chr2:128274200-128282000	Strong transcription	Placenta	Placenta
48	chr2:128274200-128282200	Weak transcription	Lung	lung
49	chr2:128274200-128282200	Weak transcription	Spleen	Spleen
50	chr2:128274200-128282600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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