Variant report

Variant	rs13027520
Chromosome Location	chr2:39755741-39755742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10191970	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11896239	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12994521	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13015976	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13391377	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023874	0.80[ASN][1000 genomes]
rs17023923	0.86[ASN][1000 genomes]
rs17533512	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2888602	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs35377016	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670282	0.92[ASN][1000 genomes]
rs4670285	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4670943	0.91[ASN][1000 genomes]
rs4670944	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56337010	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6740898	0.85[ASN][1000 genomes]
rs71439259	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72803112	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72803115	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs734663	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7588713	0.82[ASN][1000 genomes]
rs7594624	0.80[ASN][1000 genomes]
rs7594967	0.84[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7608399	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39749400-39757200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:39749400-39758000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:39749400-39761000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:39750000-39761000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:39750800-39760200	Weak transcription	Gastric	stomach
6	chr2:39751200-39760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:39751400-39760200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:39751600-39757200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:39751800-39757000	Weak transcription	HUVEC	blood vessel
10	chr2:39752000-39756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:39752400-39757600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:39752600-39756600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:39752600-39756600	Weak transcription	NHDF-Ad	bronchial
14	chr2:39752600-39757000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:39752600-39757000	Weak transcription	NHEK	skin
16	chr2:39752600-39757000	Weak transcription	Osteobl	bone
17	chr2:39752600-39757200	Weak transcription	Hela-S3	cervix
18	chr2:39752600-39757200	Weak transcription	NHLF	lung
19	chr2:39752600-39760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:39752600-39760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:39752800-39757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:39753000-39756800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:39753000-39757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:39753000-39757000	Weak transcription	HSMM	muscle
25	chr2:39753000-39758000	Weak transcription	Placenta	Placenta
26	chr2:39753200-39757000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:39753200-39760200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:39753400-39755800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:39753400-39756000	Weak transcription	Left Ventricle	heart
30	chr2:39753400-39757200	Weak transcription	Fetal Heart	heart
31	chr2:39753400-39757400	Weak transcription	Adipose Nuclei	Adipose
32	chr2:39753400-39757400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr2:39753400-39757600	Weak transcription	NH-A	brain
34	chr2:39753400-39758000	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:39753400-39761000	Weak transcription	HSMMtube	muscle
36	chr2:39753400-39768400	Weak transcription	Right Ventricle	heart
37	chr2:39753400-39768600	Weak transcription	Right Atrium	heart
38	chr2:39753600-39758200	Weak transcription	Lung	lung
39	chr2:39753600-39767000	Weak transcription	Psoas Muscle	Psoas
40	chr2:39754200-39757200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:39754400-39757600	Weak transcription	HepG2	liver
42	chr2:39755000-39757600	Weak transcription	GM12878-XiMat	blood
43	chr2:39755200-39757600	Weak transcription	Primary B cells from peripheral blood	blood

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