Variant report

Variant	rs13027919
Chromosome Location	chr2:37567636-37567637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2241163	0.83[ASN][1000 genomes]
rs2251879	0.83[EUR][1000 genomes]
rs28384455	0.86[ASN][1000 genomes]
rs3755191	0.86[ASN][1000 genomes]
rs3755192	0.87[ASN][1000 genomes]
rs4610034	0.82[ASN][1000 genomes]
rs6544068	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7563610	0.84[AFR][1000 genomes]
rs7593932	0.95[ASN][1000 genomes]
rs952711	0.87[ASN][1000 genomes]
rs952712	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13027919	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs13027919	CEBPZ	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37565200-37570600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:37565600-37569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:37565600-37570600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:37566200-37569400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:37566400-37569000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:37566400-37569800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:37566400-37570000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:37567600-37567800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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