Variant report

Variant	rs13028106
Chromosome Location	chr2:63228571-63228572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63227377..63229760-chr2:63230122..63232451,2	K562	blood:
2	chr2:63226427..63228945-chr2:63274746..63277717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231609	Chromatin interaction
ENSG00000115507	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35849680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63151400-63272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63167600-63256000	Weak transcription	HSMMtube	muscle
3	chr2:63169600-63228800	Weak transcription	GM12878-XiMat	blood
4	chr2:63169800-63237000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:63170400-63255600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:63171800-63233000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:63182000-63228800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:63190400-63228800	Weak transcription	Gastric	stomach
9	chr2:63197600-63234800	Strong transcription	HepG2	liver
10	chr2:63199800-63258200	Weak transcription	Lung	lung
11	chr2:63200800-63239400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr2:63204800-63229800	Weak transcription	Thymus	Thymus
13	chr2:63205000-63238200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:63205800-63232400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:63207600-63235200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:63207800-63234000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:63207800-63246000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:63207800-63258000	Weak transcription	Placenta	Placenta
19	chr2:63208200-63242600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:63209400-63260000	Weak transcription	Aorta	Aorta
21	chr2:63209600-63239800	Weak transcription	Psoas Muscle	Psoas
22	chr2:63210000-63234200	Weak transcription	Fetal Thymus	thymus
23	chr2:63210000-63235400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr2:63210200-63232200	Weak transcription	Brain Germinal Matrix	brain
25	chr2:63213200-63229000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr2:63216400-63231400	Weak transcription	Fetal Brain Male	brain
27	chr2:63216600-63229200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr2:63219200-63245600	Weak transcription	Brain Hippocampus Middle	brain
29	chr2:63219200-63269800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr2:63219400-63261600	Weak transcription	Brain Angular Gyrus	brain
31	chr2:63220200-63250600	Weak transcription	Small Intestine	intestine
32	chr2:63220800-63236200	Weak transcription	Fetal Intestine Small	intestine
33	chr2:63221400-63232200	Weak transcription	NH-A	brain
34	chr2:63221600-63230200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr2:63221600-63232200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:63221600-63255600	Weak transcription	Fetal Kidney	kidney
37	chr2:63221800-63233800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr2:63221800-63245800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:63221800-63255200	Weak transcription	Primary B cells from cord blood	blood
40	chr2:63224200-63242000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr2:63224400-63229400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr2:63224400-63232200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr2:63224400-63233200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:63224400-63234400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr2:63224400-63239800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:63224400-63240400	Weak transcription	Primary T cells from cord blood	blood
47	chr2:63224400-63240400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr2:63224400-63240600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr2:63224400-63243800	Weak transcription	Fetal Stomach	stomach
50	chr2:63224400-63248400	Weak transcription	Rectal Mucosa Donor 29	rectum

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