Variant report

Variant	rs13029883
Chromosome Location	chr2:151878173-151878174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151872234..151873840-chr2:151877034..151878622,2	MCF-7	breast:
2	chr2:151342714..151344287-chr2:151875925..151878501,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12151382	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12692891	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12986591	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12988085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12989382	0.88[EUR][1000 genomes]
rs12991256	0.88[EUR][1000 genomes]
rs12992982	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994047	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12994178	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12995446	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12996606	0.84[AFR][1000 genomes]
rs12998436	0.85[EUR][1000 genomes]
rs13001965	0.88[EUR][1000 genomes]
rs13003276	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13003635	0.85[EUR][1000 genomes]
rs13005105	0.82[AMR][1000 genomes]
rs13006345	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13009161	0.90[EUR][1000 genomes]
rs13009389	0.90[EUR][1000 genomes]
rs13010850	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13016337	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13016725	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13018464	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13019269	0.90[EUR][1000 genomes]
rs13022902	0.87[EUR][1000 genomes]
rs13022926	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13023089	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13023613	0.90[EUR][1000 genomes]
rs13023827	0.84[AFR][1000 genomes]
rs13027517	0.90[EUR][1000 genomes]
rs13028601	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13028980	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13030344	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13030392	0.91[EUR][1000 genomes]
rs13034876	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13036251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1485118	0.84[AFR][1000 genomes]
rs1580440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601356	0.90[EUR][1000 genomes]
rs16829095	0.90[EUR][1000 genomes]
rs1859722	0.88[EUR][1000 genomes]
rs2108198	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2108199	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2341928	0.90[EUR][1000 genomes]
rs2341929	0.93[EUR][1000 genomes]
rs2341930	0.93[EUR][1000 genomes]
rs2341931	0.87[EUR][1000 genomes]
rs34018967	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34113888	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34372555	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34398830	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34462888	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35480175	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35891175	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35967096	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57201384	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66919845	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67547706	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs731976	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs990127	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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