Variant report

Variant	rs13030091
Chromosome Location	chr2:141193558-141193559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11891221	0.83[EUR][1000 genomes]
rs11897270	0.85[EUR][1000 genomes]
rs11898162	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11899434	0.83[EUR][1000 genomes]
rs12999683	0.87[EUR][1000 genomes]
rs13003817	0.87[EUR][1000 genomes]
rs13003819	0.87[EUR][1000 genomes]
rs13003828	0.87[EUR][1000 genomes]
rs13023944	0.86[EUR][1000 genomes]
rs13030114	0.87[EUR][1000 genomes]
rs1401114	0.84[EUR][1000 genomes]
rs1401115	0.83[EUR][1000 genomes]
rs1518443	0.84[EUR][1000 genomes]
rs1518446	0.84[EUR][1000 genomes]
rs17387299	0.87[EUR][1000 genomes]
rs1878742	0.84[EUR][1000 genomes]
rs6747180	0.82[EUR][1000 genomes]
rs72897830	0.83[EUR][1000 genomes]
rs72898290	0.84[EUR][1000 genomes]
rs7593984	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141193000-141193600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr2:141193000-141193600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:141193200-141193600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:141193200-141193600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr2:141193200-141193600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:141193200-141194600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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