Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10185952	0.86[JPT][hapmap]
rs12470829	0.86[CEU][hapmap]
rs12478797	0.86[CEU][hapmap]
rs1369295	0.86[CEU][hapmap]
rs1377234	0.80[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1377239	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1421567	0.86[CEU][hapmap]
rs1421577	0.86[CEU][hapmap]
rs1469003	0.86[CEU][hapmap]
rs1477248	0.86[CEU][hapmap]
rs1477249	0.86[CEU][hapmap]
rs1541642	0.86[CEU][hapmap]
rs1715984	0.86[JPT][hapmap]
rs2351149	0.84[CEU][hapmap]
rs2602002	0.81[CEU][hapmap]
rs2602003	0.80[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2678221	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2678229	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2688892	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2859977	0.86[CEU][hapmap]
rs4971632	0.86[CEU][hapmap]
rs6545137	0.86[CEU][hapmap]
rs6706484	0.86[CEU][hapmap]
rs6706613	0.86[CEU][hapmap]
rs6714990	0.86[CEU][hapmap]
rs7593705	0.93[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs7596020	0.85[CEU][hapmap]
rs930295	0.86[CEU][hapmap]
rs980794	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1004550	chr2:50250335-50274067	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv581838	chr2:50250758-50274774	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50270000-50271000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr2:50270000-50271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:50270000-50271600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:50270200-50270600	Enhancers	Fetal Intestine Large	intestine
5	chr2:50270200-50270600	Enhancers	Fetal Intestine Small	intestine
6	chr2:50270200-50271000	Enhancers	Primary hematopoietic stem cells	blood

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