Variant report

Variant	rs13032140
Chromosome Location	chr2:30327901-30327902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1374724	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1509579	0.80[AFR][1000 genomes]
rs17009154	0.80[AFR][1000 genomes]
rs2361751	0.86[AMR][1000 genomes]
rs4951982	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4952094	0.86[AMR][1000 genomes]
rs57641749	0.86[AMR][1000 genomes]
rs6739748	0.80[AFR][1000 genomes]
rs6752385	0.80[AFR][1000 genomes]
rs7603389	0.86[AMR][1000 genomes]
rs7608690	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30322200-30328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:30327800-30328400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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