Variant report

Variant	rs13033702
Chromosome Location	chr2:189150420-189150421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12611919	0.86[YRI][hapmap]
rs35365782	0.82[AMR][1000 genomes]
rs4132426	0.90[ASN][1000 genomes]
rs4381753	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4667222	0.85[YRI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1811040	chr2:189119837-189150420	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189144000-189155400	Weak transcription	Aorta	Aorta
2	chr2:189144200-189156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:189145000-189154600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:189145000-189155400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:189148400-189152800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:189149400-189151200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:189150200-189152600	Active TSS	K562	blood
8	chr2:189150200-189154400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:189150200-189155200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:189150400-189150800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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