Variant report

Variant	rs13034332
Chromosome Location	chr2:186204586-186204587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490730	0.85[AFR][1000 genomes]
rs10931169	0.92[AFR][1000 genomes]
rs11681671	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687947	0.92[AFR][1000 genomes]
rs11694167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666681	0.92[AFR][1000 genomes]
rs6751584	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875514	chr2:185865740-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875515	chr2:185992567-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2753539	chr2:186025368-186216101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv875517	chr2:186031490-186239607	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv875518	chr2:186047066-186239607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv875519	chr2:186109320-186213755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv584008	chr2:186124709-186216747	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv875520	chr2:186173063-186239607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875521	chr2:186178814-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875522	chr2:186178814-186259653	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv998916	chr2:186181992-186217685	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv997942	chr2:186186648-186217685	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv875523	chr2:186189411-186239607	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv1006037	chr2:186193269-186217685	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv584009	chr2:186203397-186345148	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186203600-186207400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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