Variant report

Variant	rs13034798
Chromosome Location	chr2:37781334-37781335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37779367..37783955-chr2:37786259..37791654,6	K562	blood:
2	chr2:37776380..37779203-chr2:37779985..37783372,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13003642	1.00[AFR][1000 genomes]
rs34291529	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34801181	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35386138	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37774200-37782600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:37777800-37782200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:37777800-37782200	Weak transcription	Thymus	Thymus
4	chr2:37778200-37781400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:37778200-37781800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:37778200-37782000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr2:37779400-37787400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:37779400-37787800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:37779600-37782200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:37779600-37782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:37779800-37783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:37780000-37782400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:37780000-37782400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:37780000-37783000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:37780000-37783400	Enhancers	Primary hematopoietic stem cells	blood
16	chr2:37780200-37781400	Weak transcription	GM12878-XiMat	blood
17	chr2:37780200-37787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:37780200-37787600	Weak transcription	HMEC	breast
19	chr2:37780400-37782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:37780400-37787400	Weak transcription	Adipose Nuclei	Adipose
21	chr2:37780400-37787600	Weak transcription	NHDF-Ad	bronchial
22	chr2:37780400-37788000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:37780400-37788000	Weak transcription	NHEK	skin
24	chr2:37780600-37781800	Enhancers	Fetal Brain Female	brain
25	chr2:37781000-37781400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr2:37781000-37783600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr2:37781000-37783800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:37781200-37781600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:37781200-37781600	Enhancers	K562	blood
30	chr2:37781200-37781800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:37781200-37783400	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links