Variant report

Variant	rs13034962
Chromosome Location	chr2:20623714-20623715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20622359..20625162-chr2:20646230..20647931,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143878	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455830	chr2:20621404-20659862	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv581166	chr2:20621404-20659862	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13034962	ATAD2B	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20615600-20624200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20618200-20625800	Enhancers	Fetal Muscle Leg	muscle
3	chr2:20618200-20626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:20618400-20626000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:20619200-20624400	Weak transcription	Small Intestine	intestine
6	chr2:20619800-20624600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:20620000-20624400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:20620200-20625400	Enhancers	HSMM	muscle
9	chr2:20621000-20626000	Enhancers	NHDF-Ad	bronchial
10	chr2:20621200-20623800	Enhancers	Right Atrium	heart
11	chr2:20621200-20625400	Enhancers	Fetal Lung	lung
12	chr2:20621200-20625600	Enhancers	Fetal Stomach	stomach
13	chr2:20621200-20625800	Enhancers	Placenta	Placenta
14	chr2:20621200-20625800	Enhancers	HMEC	breast
15	chr2:20621200-20626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:20621200-20626000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:20621200-20626200	Enhancers	Spleen	Spleen
18	chr2:20621600-20625600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr2:20621800-20624000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:20621800-20624200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:20621800-20626000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:20621800-20629000	Weak transcription	Gastric	stomach
23	chr2:20622000-20625600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:20622000-20626200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:20622200-20624200	Enhancers	Adipose Nuclei	Adipose
26	chr2:20622200-20625600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:20622600-20623800	Weak transcription	Colonic Mucosa	Colon
28	chr2:20622600-20624000	Weak transcription	Brain Angular Gyrus	brain
29	chr2:20622600-20624000	Weak transcription	NHEK	skin
30	chr2:20622600-20624000	Weak transcription	Osteobl	bone
31	chr2:20622800-20624200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:20622800-20624200	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr2:20622800-20624200	Bivalent Enhancer	HepG2	liver
34	chr2:20622800-20624400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:20622800-20625600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr2:20622800-20625600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr2:20622800-20626200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:20623000-20623800	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:20623000-20624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:20623000-20624000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:20623000-20624000	Weak transcription	Esophagus	oesophagus
42	chr2:20623000-20624200	Enhancers	Duodenum Mucosa	Duodenum
43	chr2:20623000-20624200	Weak transcription	Right Ventricle	heart
44	chr2:20623000-20624200	Enhancers	Stomach Smooth Muscle	stomach
45	chr2:20623000-20624200	Enhancers	NHLF	lung
46	chr2:20623000-20624400	Enhancers	Primary B cells from peripheral blood	blood
47	chr2:20623000-20624400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:20623000-20624400	Weak transcription	Stomach Mucosa	stomach
49	chr2:20623000-20624800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:20623000-20625600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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