Variant report

Variant	rs13035388
Chromosome Location	chr2:39791925-39791926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12994521	0.81[ASN][1000 genomes]
rs13015976	0.81[ASN][1000 genomes]
rs13020343	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1405085	0.87[ASN][1000 genomes]
rs17474808	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4670944	0.87[ASN][1000 genomes]
rs71439259	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39778800-39797400	Weak transcription	Fetal Heart	heart
2	chr2:39790200-39795000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:39791400-39792000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:39791400-39792200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:39791400-39792200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:39791600-39792000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:39791600-39792000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:39791600-39792200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:39791600-39792200	ZNF genes & repeats	Gastric	stomach
10	chr2:39791600-39792400	ZNF genes & repeats	Fetal Stomach	stomach
11	chr2:39791600-39794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:39791600-39796000	Weak transcription	Right Atrium	heart
13	chr2:39791800-39792400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:39791800-39793000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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