Variant report

Variant	rs13036777
Chromosome Location	chr20:25048309-25048310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2892313	0.86[ASN][1000 genomes]
rs4813547	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6050290	0.82[EUR][1000 genomes]
rs6076315	0.83[AFR][1000 genomes]
rs6115026	0.88[ASN][1000 genomes]
rs62217199	0.83[AFR][1000 genomes]
rs743018	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3345945	chr20:25046552-25049850	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3361205	chr20:25046552-25049950	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25046400-25057200	Weak transcription	Brain Substantia Nigra	brain
2	chr20:25046600-25052000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr20:25046800-25057400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:25046800-25058200	Weak transcription	Right Atrium	heart
5	chr20:25047800-25048400	Genic enhancers	Pancreas	Pancrea
6	chr20:25047800-25048600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:25047800-25048600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr20:25047800-25048600	ZNF genes & repeats	Fetal Kidney	kidney
9	chr20:25047800-25048600	Bivalent/Poised TSS	Fetal Lung	lung
10	chr20:25047800-25048800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:25048000-25048600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr20:25048000-25048600	ZNF genes & repeats	Gastric	stomach
13	chr20:25048200-25048600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:25048200-25048600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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