Variant report
Variant | rs13036915 |
---|---|
Chromosome Location | chr20:14377402-14377403 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13037096 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs13038084 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13039855 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13039862 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13040337 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13040558 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13040987 | 0.81[AMR][1000 genomes] |
rs13042179 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13042866 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13044911 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs17226957 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17226971 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17226999 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs17812658 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1998236 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2210655 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs34021592 | 0.97[EUR][1000 genomes] |
rs34085437 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs34094793 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34522477 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs34538736 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs34880844 | 0.83[AMR][1000 genomes] |
rs34896694 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34985688 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35346025 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35438476 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35445955 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs35505382 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs35554517 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs35577212 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs35631624 | 0.81[AMR][1000 genomes] |
rs35733982 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs35943017 | 0.81[AMR][1000 genomes] |
rs35989081 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs36062805 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs41328645 | 0.85[AMR][1000 genomes] |
rs4630827 | 0.81[AMR][1000 genomes] |
rs4814301 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs62204373 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62204396 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs62204398 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs62204402 | 0.81[AMR][1000 genomes] |
rs62204403 | 0.81[AMR][1000 genomes] |
rs62207626 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62207627 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs62207628 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs74179739 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs74179740 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs915074 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs915075 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs963329 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv1061705 | chr20:14330029-14430604 | Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1062079 | chr20:14334350-14429820 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv1063787 | chr20:14341199-14408090 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv585440 | chr20:14352394-14457834 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv1063733 | chr20:14357857-14459453 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv585441 | chr20:14374573-14455497 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14365400-14387000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |